One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/apache/2019/10/25/compare-matrices_2019-10-25.143632_tqOpKk/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/apache/2019/10/25/compare-matrices_2019-10-25.143632_tqOpKk/compare-matrices.tab

One-to-n matrix alignment; reference matrix: dyads_test_vs_ctrl_m1_shift4 ; 17 matrices ; sort_field=rank_mean

Matrix nameAligned logoscor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
dyads_test_vs_ctrl_m1_shift4 (dyads_test_vs_ctrl_m1)                         
; dyads_test_vs_ctrl_m1; m=0 (reference); ncol1=14; shift=4; ncol=23; ----hyaAAACCCTAGyw-----
; Alignment reference
a	0	0	0	0	17	10	35	63	66	64	14	2	0	1	52	11	16	18	0	0	0	0	0
c	0	0	0	0	17	22	13	1	0	0	50	60	65	2	4	7	23	14	0	0	0	0	0
g	0	0	0	0	14	15	11	0	0	2	1	2	0	0	5	46	10	14	0	0	0	0	0
t	0	0	0	0	18	19	7	2	0	0	1	2	1	63	5	2	17	20	0	0	0	0	0
AT1G72740_MA1353.1_JASPAR_shift4 (AT1G72740:MA1353.1:JASPAR) 0.860 0.803 9.639 0.934 0.940 4 1 4 2 4 3.000 1 
; dyads_test_vs_ctrl_m1 versus AT1G72740_MA1353.1_JASPAR (AT1G72740:MA1353.1:JASPAR); m=1/16; ncol2=15; w=14; offset=0; strand=D; shift=4; score=      3; ----cctAAACCCTAAwyc----
; cor=0.860; Ncor=0.803; logoDP=9.639; NsEucl=0.934; NSW=0.940; rcor=4; rNcor=1; rlogoDP=4; rNsEucl=2; rNSW=4; rank_mean=3.000; match_rank=1
a	0	0	0	0	62	69	59	214	282	282	10	0	0	0	289	242	138	9	37	0	0	0	0
c	0	0	0	0	154	159	46	3	3	0	281	291	291	0	0	0	41	129	157	0	0	0	0
g	0	0	0	0	23	34	51	22	2	9	0	0	0	0	1	49	2	16	27	0	0	0	0
t	0	0	0	0	52	29	135	52	4	0	0	0	0	291	1	0	110	137	70	0	0	0	0
MYB1-like_MA1030.1_JASPAR_shift8 (MYB1-like:MA1030.1:JASPAR) 0.870 0.621 4.746 0.926 0.945 2 2 11 4 2 4.200 2 
; dyads_test_vs_ctrl_m1 versus MYB1-like_MA1030.1_JASPAR (MYB1-like:MA1030.1:JASPAR); m=2/16; ncol2=10; w=10; offset=4; strand=D; shift=8; score=    4.2; --------wrmCCTArhy-----
; cor=0.870; Ncor=0.621; logoDP=4.746; NsEucl=0.926; NSW=0.945; rcor=2; rNcor=2; rlogoDP=11; rNsEucl=4; rNSW=2; rank_mean=4.200; match_rank=2
a	0	0	0	0	0	0	0	0	416	535	416	26	41	10	832	373	266	241	0	0	0	0	0
c	0	0	0	0	0	0	0	0	113	24	562	962	928	1	32	132	258	256	0	0	0	0	0
g	0	0	0	0	0	0	0	0	60	369	7	1	27	0	83	389	226	220	0	0	0	0	0
t	0	0	0	0	0	0	0	0	411	72	15	11	4	989	54	106	250	283	0	0	0	0	0
LOC_Os01g51154_M1361_1.02_CISBP_shift8 (LOC_Os01g51154:M1361_1.02:CISBP) 0.870 0.621 4.766 0.926 0.945 3 3 10 5 3 4.800 3 
; dyads_test_vs_ctrl_m1 versus LOC_Os01g51154_M1361_1.02_CISBP (LOC_Os01g51154:M1361_1.02:CISBP); m=3/16; ncol2=10; w=10; offset=4; strand=D; shift=8; score=    4.8; --------wrmCCTArhy-----
; cor=0.870; Ncor=0.621; logoDP=4.766; NsEucl=0.926; NSW=0.945; rcor=3; rNcor=3; rlogoDP=10; rNsEucl=5; rNSW=3; rank_mean=4.800; match_rank=3
a	0	0	0	0	0	0	0	0	42	53	42	3	4	1	83	37	27	24	0	0	0	0	0
c	0	0	0	0	0	0	0	0	11	3	56	96	93	0	4	13	25	26	0	0	0	0	0
g	0	0	0	0	0	0	0	0	6	37	1	0	3	0	8	39	23	22	0	0	0	0	0
t	0	0	0	0	0	0	0	0	41	7	1	1	0	99	5	11	25	28	0	0	0	0	0
0100010593_M1389_1.02_CISBP_shift7 (0100010593:M1389_1.02:CISBP) 0.858 0.613 3.875 0.915 0.928 5 4 13 8 7 7.400 6 
; dyads_test_vs_ctrl_m1 versus 0100010593_M1389_1.02_CISBP (0100010593:M1389_1.02:CISBP); m=6/16; ncol2=10; w=10; offset=3; strand=D; shift=7; score=    7.4; -------wwAMCCTarw------
; cor=0.858; Ncor=0.613; logoDP=3.875; NsEucl=0.915; NSW=0.928; rcor=5; rNcor=4; rlogoDP=13; rNsEucl=8; rNSW=7; rank_mean=7.400; match_rank=6
a	0	0	0	0	0	0	0	39	41	78	27	5	9	2	59	34	28	0	0	0	0	0	0
c	0	0	0	0	0	0	0	10	6	0	69	87	84	5	11	18	24	0	0	0	0	0	0
g	0	0	0	0	0	0	0	20	5	15	1	3	4	1	16	27	19	0	0	0	0	0	0
t	0	0	0	0	0	0	0	31	48	7	3	5	3	92	14	21	29	0	0	0	0	0	0